Document type
Book chapters
Title
Biophysical and Spectroscopic Methods for Monitoring Protein Misfolding and Amyloid Aggregation
Participants in the publication
Joana S. Cristóvão (Author)
BioISI - Biosystems & Integrative Sciences Institute
Bárbara J. Henriques (Author)
Dep. Química e Bioquímica
BioISI
Cláudio M. Gomes (Author)
Dep. Química e Bioquímica
BioISI
Summary
Proteins exhibit a remarkable structural plasticity and may undergo conformational changes resulting in protein misfolding both in a biological context and upon perturbing physiopathological conditions. Such nonfunctional protein conformers, including misfolded states and aggregates, are often associated to protein folding diseases. Understanding the biology of protein folding diseases thus requires tools that allow the structural characterization of nonnative conformations of proteins and their interconversions. Here we present detailed procedures to monitor protein conformational changes and aggregation based on spectroscopic and biophysical methods that include circular dichroism, ATR-Fourier-transformed infrared spectroscopy, fluorescence spectroscopy and dynamic light scattering. To illustrate the application of these methods we report to our previous studies on misfolding, aggregation and amyloid fibril formation by superoxide dismutase 1 (SOD1), a protein whose toxic deposition is implicated in the neurodegenerative disease amyotrophic lateral sclerosis (ALS).
Editor(s)
Cláudio M. Gomes
Institution
Biosystems & Integrative Sciences Institute, Faculdade de Ciências, Universidade de Lisboa, Portugal.
Where published
Protein Misfolding Diseases - Methods and Protocols
Publication Identifiers
ISSN - 1064-3745
ISBN - 9781493988198
Address
New York, NY
Publisher
Humana Press
Collection
Methods in Molecular Biology
Number of pages
15
Starting page
3
Last page
18
Document Identifiers
URL -
https://www.ncbi.nlm.nih.gov/pubmed/30341600
URL -
https://link.springer.com/protocol/10.1007/978-1-4939-8820-4_1
DOI -
https://doi.org/10.1007/978-1-4939-8820-4_1
Rankings
SCIMAGO Q3 (2018) - 0.605 - Molecular Biology
Keywords
Protein aggregation
Fourier-transformed infrared spectroscopy
Fluorescence
Dynamic light scattering
Circular dichroism
Amyloid
ALS
Protein misfolding
SOD1
Thioflavin T