BIBLIOS

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Publications for dpfaria (31)

2023
The ImmunoPeptidomics Ontology : design and evaluation (2023)
Eugénio, Patrícia Raquel dos Anjos
Pesquita, Cátia Luísa Santana Calisto
Faria, Daniel Pedro de Jesus
Academic documents
2022
Plant Science Data Integration, from Building Community Standards to Defining a Consistent Data Lifecycle (2022)
Cyril Pommier et al., with 10 authors including:
Daniel Faria
Célia Miguel
Book chapters
2021
Helping scientists integrate and interact with biomedical data (2021)
Ana Rita Pereira Guerreiro
Cátia Luisa Santana Calisto Pesquita
Daniel Pedro de Jesus Faria
Academic documents
2021
Breaking rules: taking Complex Ontology Alignment beyond rulebased approaches (2021)
Beatriz Fonseca de Lima
Cátia Luisa Santana Calisto Pesquita
Daniel Pedro de Jesus Faria
Academic documents
2021
Vitamin D-related polymorphisms and vitamin D levels as risk biomarkers of COVID-19 disease severity (2021)
Ana Teresa Freitas et al., with 36 authors including:
Daniel Faria
Journal articles
2021
Challenges of evaluating complex alignments (2021)
Beatriz Lima
Daniel Faria
Catia Pesquita
Conference papers
2021
VOWLMap: Graph-based Ontology Alignment Visualization and Editing (2021)
Ana Guerreiro
Catia Pesquita
Daniel Faria
Conference papers
2021
Breaking rules: taking Complex Ontology Alignment beyond rule­based approaches (2021)
Lima, Beatriz Fonseca de
Pesquita, Cátia
Faria, Daniel Pedro de Jesus
Academic documents
2020
CorkOakDB—The Cork Oak Genome Database Portal (2020)
Cirenia Arias-Baldrich et al., with 9 authors including:
Célia Miguel
Daniel Faria
Journal articles
2020
Enabling reusability of plant phenomic datasets with MIAPPE 1.1 (2020)
Evangelia A. Papoutsoglou et al., with 37 authors including:
Daniel Faria
Bruno V. Costa
Célia M. Miguel
Journal articles
2020
Crowd-assessing quality in uncertain data linking datasets (2020)
Daniel Faria
Alfio Ferrara
Ernesto Jiménez-ruiz
Stefano Montanelli
Catia Pesquita
Journal articles
2020
Towards evaluating complex ontology alignments (2020)
Lu Zhou et al., with 7 authors including:
Daniel Faria
Catia Pesquita
Journal articles
2019
User validation in ontology alignment: functional assessment and impact (2019)
Huanyu Li et al., with 7 authors including:
Daniel Faria
Catia Pesquita
Journal articles
2018
Tackling the challenges of matching biomedical ontologies (2018)
Daniel Faria et al., with 6 authors including:
Daniel Faria
Catia Pesquita
Francisco M. Couto
Journal articles
2018
Results of the Ontology Alignment Evaluation Initiative 2018 (2018)
Catia Pesquita
Daniel Faria
Alsayed Algergawy, Michelle Cheatham, Alfio Ferrara, Irina Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jimenez-Ruiz, Naouel Karam, Abderrahman Khiat, Patrick Lambrix, Huanyu Li, Stefano Montanelli, Heiko Paulheim, Tzanina Saveta, Daniela Schmidt, Pavel Shvaiko, Andrea Splendiani, Elodie Thiéblin, Cassia Trojahn, Jana Vatascinova, Ondrej Zamazal, Lu Zhou
Conference papers
2017
Results of the ontology alignment evaluation initiative 2017 (2017)
C Pesquita
Daniel Faria
Manel Achichi, Michelle Cheatham, Zlatan Dragisic, Jérôme Euzenat, Alfio Ferrara, Giorgos Flouris, Irini Fundulaki, Ian Harrow, Valentina Ivanova, Ernesto Jiménez-Ruiz, Kristian Kolthoff, Elena Kuss, Patrick Lambrix, Henrik Leopold, Huanyu Li, Christian Meilicke, Majid Mohammadi, T Saveta, P Shvaiko, A Splendiani, H Stuckenschmidt, E Thieblin, K Todorov, C Trojahn, O Zamazal
Conference papers
2016
Optmizing 16S sequencing analysis pipelines (2016)
Viana, Samuel Dias Rosa
Pesquita, Idália Maria Pereira
Faria, Daniel Pedro de Jesus
Academic documents
2016
User Validation in Ontology Alignment (2016)
Zlatan Dragisic et al., with 6 authors including:
Daniel Faria
Catia Pesquita
Conference papers
2015
Ontology alignment repair through modularization and confidence-based heuristics (2015)
Emanuel Santos
Daniel Faria
Cátia Pesquita
Francisco Couto
Journal articles
2015
Visualization and editing of biomedical ontology alignments in AgreementMakerLight (2015)
Catarina Martins
Daniel Faria
Cátia Pesquita
Conference papers
2015
Results of the Ontology Alignment Evaluation Initiative 2015 (2015)
Cheatham et al., with 8 authors including:
Daniel Faria
Other
2014
Towards Annotating Potential Incoherences in BioPortal Mappings (2014)
Daniel Faria
Ernesto Jiménez-Ruiz
Catia Pesquita
Emanuel Santos
Francisco M. Couto
Conference papers
2014
AgreementMakerLight: A Scalable Automated Ontology Matching System (2014)
Daniel Faria
Cátia Pesquita
Emanuel Santos
Isabel Cruz
Francisco Couto
Conference papers
2014
Building reference alignments for compound matching of multiple ontologies using obo cross-products (2014)
Catia Pesquita et al., with 6 authors including:
Catia Pesquita
Daniel Faria
Francisco M. Couto
Conference papers
2014
Automatic Background Knowledge Selection for Matching Biomedical Ontologies (2014)
Daniel Faria
Cátia Pesquita
Emanuel Santos
Isabel Cruz
Francisco Couto
Journal articles
2013
Ontology alignment repair through modularization and confidence-based heuristics (2013)
Emanuel Santos
Daniel Faria
Cátia Pesquita
Francisco Couto
Other
2013
What's in a `nym'? synonyms in biomedical ontology matching (2013)
Cátia Pesquita et al., with 6 authors including:
Cátia Pesquita
Daniel Faria
Francisco Couto
Conference papers
2013
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments (2013)
Cátia Pesquita
Daniel Faria
Emanuel Santos
Francisco Couto
Conference papers
2013
The AgreementMakerLight ontology matching system (2013)
Daniel Faria et al., with 6 authors including:
Daniel Faria
Cátia Pesquita
Francisco Couto
Conference papers
2012
Automated knowledge extraction from protein sequence (2012)
Faria, Daniel Pedro de Jesus
Falcão, André Osório e Cruz de Azerêdo
Ferreira, António Eduardo do Nascimento
Academic documents
2009
GOclasses: molecular function as viewed by proteins (2009)
Daniel Faria
Catia Pesquita
Francisco Couto
André Falcão
Conference papers